The Wall, the Lasagna, and the Last Biologist Who Codes
Back from the Swiss Proteomics meeting in Bern with a few observations: data is winning, lasagna is underrated as a visualization paradigm, and you’re running out of time to learn R.
Posts by Tags
AI
Announcing MCPR: The First AI Protocol for Live R Sessions
MCPR solves the fundamental disconnect between AI agents and interactive data analysis by enabling direct execution within live R sessions, transforming AI from a code generator into a computational extension of analytical thinking.
CodeDjinn: Engineering Simplicity in the Age of AI Complexity
This weekend I managed to finish a very fun project! I think there are two kinds of bioinformaticians: computer scientists that for one reason or another get into biology…
CLI
CodeDjinn: Engineering Simplicity in the Age of AI Complexity
This weekend I managed to finish a very fun project! I think there are two kinds of bioinformaticians: computer scientists that for one reason or another get into biology…
NLP
Analysing twitter sentiment and topics
A fun tool to grasp the moody mood of the twitter world
R
Making plotly labels behave: the story behind plotly.repel
Today I am publishing plotly.repel, an R package that brings ggrepel-style label repulsion to interactive plotly charts…
Announcing MCPR: The First AI Protocol for Live R Sessions
MCPR solves the fundamental disconnect between AI agents and interactive data analysis by enabling direct execution within live R sessions, transforming AI from a code generator into a computational extension of analytical thinking.
The Great OOP Graveyard: Why R’s Class System Chaos Actually Makes Sense
S3, S4, R6, S7 and a scrapyard of dead class systems. Why R’s object-oriented mess is not an accident, and how to pick the right one when you finally have to leave the functional comfort zone.
Building RMarkdown Reports from the CLI: A Tale of Persistence
R, the good, the bad. I’ve learned that R shines brightest in three areas: statistical analysis, data visualization, and report generation.
Shiny strikes back!
Shiny strikes back. A little bit over three weeks after publishing my first Shiny app, here comes my new creation freePrism! This app
The shiny milestone
Ah, the sweet satisfaction of completing a (mini) project. Today, I publish
R6
The Great OOP Graveyard: Why R’s Class System Chaos Actually Makes Sense
S3, S4, R6, S7 and a scrapyard of dead class systems. Why R’s object-oriented mess is not an accident, and how to pick the right one when you finally have to leave the functional comfort zone.
S7
The Great OOP Graveyard: Why R’s Class System Chaos Actually Makes Sense
S3, S4, R6, S7 and a scrapyard of dead class systems. Why R’s object-oriented mess is not an accident, and how to pick the right one when you finally have to leave the functional comfort zone.
WGCNA
The Wall, the Lasagna, and the Last Biologist Who Codes
Back from the Swiss Proteomics meeting in Bern with a few observations: data is winning, lasagna is underrated as a visualization paradigm, and you’re running out of time to learn R.
antibiotics
The Membrane Potential Paradox: How Bacteria Balance Permeability and Energy
How internal proton and potassium gradients gate porins, tune nutrient uptake, and shape antibiotic entry in Gram-negative bacteria.
cloud
GPU cloud computing with Paperspace
This is a side-project that I developed because the limitation of training machine learning models in my local computer. As you may know, machine learning models often require a lot of computational power to run
conference
The Wall, the Lasagna, and the Last Biologist Who Codes
Back from the Swiss Proteomics meeting in Bern with a few observations: data is winning, lasagna is underrated as a visualization paradigm, and you’re running out of time to learn R.
data-science
Announcing MCPR: The First AI Protocol for Live R Sessions
MCPR solves the fundamental disconnect between AI agents and interactive data analysis by enabling direct execution within live R sessions, transforming AI from a code generator into a computational extension of analytical thinking.
Analysing twitter sentiment and topics
A fun tool to grasp the moody mood of the twitter world
data-visualization
Making plotly labels behave: the story behind plotly.repel
Today I am publishing plotly.repel, an R package that brings ggrepel-style label repulsion to interactive plotly charts…
deep-learning
Focus restoration with restormer
Image restoration made easy
docker
GPU cloud computing with Paperspace
This is a side-project that I developed because the limitation of training machine learning models in my local computer. As you may know, machine learning models often require a lot of computational power to run
image-analysis
Focus restoration with restormer
Image restoration made easy
machine-learning
GPU cloud computing with Paperspace
This is a side-project that I developed because the limitation of training machine learning models in my local computer. As you may know, machine learning models often require a lot of computational power to run
membrane-potential
The Membrane Potential Paradox: How Bacteria Balance Permeability and Energy
How internal proton and potassium gradients gate porins, tune nutrient uptake, and shape antibiotic entry in Gram-negative bacteria.
microbiology
The Membrane Potential Paradox: How Bacteria Balance Permeability and Energy
How internal proton and potassium gradients gate porins, tune nutrient uptake, and shape antibiotic entry in Gram-negative bacteria.
microscopy
Focus restoration with restormer
Image restoration made easy
multi-omics
The Wall, the Lasagna, and the Last Biologist Who Codes
Back from the Swiss Proteomics meeting in Bern with a few observations: data is winning, lasagna is underrated as a visualization paradigm, and you’re running out of time to learn R.
open-source
Making plotly labels behave: the story behind plotly.repel
Today I am publishing plotly.repel, an R package that brings ggrepel-style label repulsion to interactive plotly charts…
CodeDjinn: Engineering Simplicity in the Age of AI Complexity
This weekend I managed to finish a very fun project! I think there are two kinds of bioinformaticians: computer scientists that for one reason or another get into biology…
Down the Rabbit Hole: My Accidental Journey to PyPI
The other day, I was dragged into the rabbit hole of a bug that does not let you sleep…
Shiny strikes back!
Shiny strikes back. A little bit over three weeks after publishing my first Shiny app, here comes my new creation freePrism! This app
The shiny milestone
Ah, the sweet satisfaction of completing a (mini) project. Today, I publish
packaging
Down the Rabbit Hole: My Accidental Journey to PyPI
The other day, I was dragged into the rabbit hole of a bug that does not let you sleep…
plotly
Making plotly labels behave: the story behind plotly.repel
Today I am publishing plotly.repel, an R package that brings ggrepel-style label repulsion to interactive plotly charts…
porins
The Membrane Potential Paradox: How Bacteria Balance Permeability and Energy
How internal proton and potassium gradients gate porins, tune nutrient uptake, and shape antibiotic entry in Gram-negative bacteria.
programming
Announcing MCPR: The First AI Protocol for Live R Sessions
MCPR solves the fundamental disconnect between AI agents and interactive data analysis by enabling direct execution within live R sessions, transforming AI from a code generator into a computational extension of analytical thinking.
The Great OOP Graveyard: Why R’s Class System Chaos Actually Makes Sense
S3, S4, R6, S7 and a scrapyard of dead class systems. Why R’s object-oriented mess is not an accident, and how to pick the right one when you finally have to leave the functional comfort zone.
proteomics
The Wall, the Lasagna, and the Last Biologist Who Codes
Back from the Swiss Proteomics meeting in Bern with a few observations: data is winning, lasagna is underrated as a visualization paradigm, and you’re running out of time to learn R.
python
CodeDjinn: Engineering Simplicity in the Age of AI Complexity
This weekend I managed to finish a very fun project! I think there are two kinds of bioinformaticians: computer scientists that for one reason or another get into biology…
Down the Rabbit Hole: My Accidental Journey to PyPI
The other day, I was dragged into the rabbit hole of a bug that does not let you sleep…
Focus restoration with restormer
Image restoration made easy
Analysing twitter sentiment and topics
A fun tool to grasp the moody mood of the twitter world
reproducibility
Building RMarkdown Reports from the CLI: A Tale of Persistence
R, the good, the bad. I’ve learned that R shines brightest in three areas: statistical analysis, data visualization, and report generation.
rmarkdown
Building RMarkdown Reports from the CLI: A Tale of Persistence
R, the good, the bad. I’ve learned that R shines brightest in three areas: statistical analysis, data visualization, and report generation.
shiny
Shiny strikes back!
Shiny strikes back. A little bit over three weeks after publishing my first Shiny app, here comes my new creation freePrism! This app
The shiny milestone
Ah, the sweet satisfaction of completing a (mini) project. Today, I publish
statistics
Shiny strikes back!
Shiny strikes back. A little bit over three weeks after publishing my first Shiny app, here comes my new creation freePrism! This app
tooling
Down the Rabbit Hole: My Accidental Journey to PyPI
The other day, I was dragged into the rabbit hole of a bug that does not let you sleep…
Building RMarkdown Reports from the CLI: A Tale of Persistence
R, the good, the bad. I’ve learned that R shines brightest in three areas: statistical analysis, data visualization, and report generation.
GPU cloud computing with Paperspace
This is a side-project that I developed because the limitation of training machine learning models in my local computer. As you may know, machine learning models often require a lot of computational power to run